hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data06/ann/db/Pfam_ser/current_seq/Pfam_ls
Sequence file:            532O09.AutoPredgene01_translated.fasta
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Query:  532O09.AutoPredgene01  

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
AT_hook  AT hook motif                                    6.9        9.9   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
AT_hook    1/1     111   123 ..     1    13 []     6.9      9.9

Alignments of top-scoring domains:
AT_hook: domain 1 of 1, from 111 to 123: score 6.9, E = 9.9
                   *->kRkRGRPrKaata<-*
                       R+RGRP+K+  +   
  532O09.Aut   111    FRGRGRPKKKWMD    123  

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