hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data06/ann/db/Pfam_ser/current_seq/Pfam_ls Sequence file: 532O09.AutoPredgene01_translated.fasta - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 532O09.AutoPredgene01 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- AT_hook AT hook motif 6.9 9.9 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- AT_hook 1/1 111 123 .. 1 13 [] 6.9 9.9 Alignments of top-scoring domains: AT_hook: domain 1 of 1, from 111 to 123: score 6.9, E = 9.9 *->kRkRGRPrKaata<-* R+RGRP+K+ + 532O09.Aut 111 FRGRGRPKKKWMD 123 //