BLASTP 1.5.6-Paracel [2003-11-25]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 532O09.AutoPredgene11
         (183 letters)

Database: BlastDB/nr_B 
           2,481,719 sequences; 841,197,525 total letters

Searching...................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|12698289|dbj|BAB21761.1| polyprotein [Bombyx mori]                 254   6e-67
gi|474339|gb|AAA17752.1| reverse transcriptase [Bombyx mori]          248   7e-65
gi|4521269|dbj|BAA76304.1| endonuclease and reverse transcriptas...   246   2e-64
gi|57506578|dbj|BAD86660.1| endonuclease [Bombyx mori]                219   2e-56

>gi|12698289|dbj|BAB21761.1| polyprotein [Bombyx mori]
          Length = 923

 Score =  254 bits (650), Expect = 6e-67
 Identities = 137/166 (82%), Positives = 138/166 (83%), Gaps = 11/166 (6%)

Query: 1   MKLGRAPDSVPVTRTVVDWHTLGISLAEXXXXXXXXXXXXXXXXQDTAEAIDIVTSHITS 60
           MKLGRAPDSVPVTRTVVDWHTLGISLAE                QDTAEAIDIVTSHITS
Sbjct: 225 MKLGRAPDSVPVTRTVVDWHTLGISLAESDPPSLPFSPDSTPSPQDTAEAIDIVTSHITS 284

Query: 61  TLDRSSKQVVAEDFLHRFKLPDDIRELLRAKNASIRAYDRYPTVENRTRMRALQRDVKSR 120
           TLDRSSKQVVAEDFLHRFKLPDDIRELLRAKNASIRAYDRYPTVENRTRMRALQRDVKSR
Sbjct: 285 TLDRSSKQVVAEDFLHRFKLPDDIRELLRAKNASIRAYDRYPTVENRTRMRALQRDVKSR 344

Query: 121 IAEVRDARWSDFLEGLAPSQSPLTTGALGLAPSYYRLARTLKSDTV 166
           IAEVRDARWSDFLEGLAPSQ            SY+RLARTLKSDTV
Sbjct: 345 IAEVRDARWSDFLEGLAPSQR-----------SYHRLARTLKSDTV 379


>gi|474339|gb|AAA17752.1| reverse transcriptase [Bombyx mori]
          Length = 960

 Score =  248 bits (632), Expect = 7e-65
 Identities = 134/166 (80%), Positives = 135/166 (81%), Gaps = 11/166 (6%)

Query: 1   MKLGRAPDSVPVTRTVVDWHTLGISLAEXXXXXXXXXXXXXXXXQDTAEAIDIVTSHITS 60
           MKLGRAPDSVPVTRTVVDWHTLGISLAE                QDTAEAIDI+TSHITS
Sbjct: 225 MKLGRAPDSVPVTRTVVDWHTLGISLAESDPPSLPFNPDSIPSPQDTAEAIDILTSHITS 284

Query: 61  TLDRSSKQVVAEDFLHRFKLPDDIRELLRAKNASIRAYDRYPTVENRTRMRALQRDVKSR 120
           TLDRSSKQVVAEDFLHRFKL DDIRELLRAKNASIRAYDRYPT ENR RMRALQRDVKSR
Sbjct: 285 TLDRSSKQVVAEDFLHRFKLSDDIRELLRAKNASIRAYDRYPTTENRIRMRALQRDVKSR 344

Query: 121 IAEVRDARWSDFLEGLAPSQSPLTTGALGLAPSYYRLARTLKSDTV 166
           IAEVRDARWSDFLEGLAPSQ            SYYRLARTLKSDTV
Sbjct: 345 IAEVRDARWSDFLEGLAPSQR-----------SYYRLARTLKSDTV 379


>gi|4521269|dbj|BAA76304.1| endonuclease and reverse
           transcriptase-like protein [Bombyx mori]
          Length = 960

 Score =  246 bits (629), Expect = 2e-64
 Identities = 133/166 (80%), Positives = 135/166 (81%), Gaps = 11/166 (6%)

Query: 1   MKLGRAPDSVPVTRTVVDWHTLGISLAEXXXXXXXXXXXXXXXXQDTAEAIDIVTSHITS 60
           MKLGR+PDSVPVTRTVVDWHTLGISLAE                QDTAEAIDI+TSHITS
Sbjct: 225 MKLGRSPDSVPVTRTVVDWHTLGISLAESDPPSLPFSPDSTPSPQDTAEAIDILTSHITS 284

Query: 61  TLDRSSKQVVAEDFLHRFKLPDDIRELLRAKNASIRAYDRYPTVENRTRMRALQRDVKSR 120
           TLDRSSKQVVAEDFLHRFKLPDDI ELLRAKNASIRAYDRYPTVENR RMRALQR VKSR
Sbjct: 285 TLDRSSKQVVAEDFLHRFKLPDDIGELLRAKNASIRAYDRYPTVENRIRMRALQRGVKSR 344

Query: 121 IAEVRDARWSDFLEGLAPSQSPLTTGALGLAPSYYRLARTLKSDTV 166
           IAEVRDARWSDFLEGLAPSQ            SYYRLARTLKSDTV
Sbjct: 345 IAEVRDARWSDFLEGLAPSQR-----------SYYRLARTLKSDTV 379


>gi|57506578|dbj|BAD86660.1| endonuclease [Bombyx mori]
          Length = 204

 Score =  219 bits (559), Expect = 2e-56
 Identities = 119/152 (78%), Positives = 120/152 (78%), Gaps = 11/152 (7%)

Query: 15  TVVDWHTLGISLAEXXXXXXXXXXXXXXXXQDTAEAIDIVTSHITSTLDRSSKQVVAEDF 74
           TVVDWHTLGISLAE                QDTAEAIDIVTSHI STLDRSSKQVVAEDF
Sbjct: 1   TVVDWHTLGISLAESDPPSLPFSPDSIPSPQDTAEAIDIVTSHIISTLDRSSKQVVAEDF 60

Query: 75  LHRFKLPDDIRELLRAKNASIRAYDRYPTVENRTRMRALQRDVKSRIAEVRDARWSDFLE 134
           LHRFKLPDDIRELLRAKNASIRAYDRYPT ENR RMRALQRDVKSRI EVRDARWSDFLE
Sbjct: 61  LHRFKLPDDIRELLRAKNASIRAYDRYPTAENRIRMRALQRDVKSRITEVRDARWSDFLE 120

Query: 135 GLAPSQSPLTTGALGLAPSYYRLARTLKSDTV 166
           GLAPSQ            SYYRLAR+LKSDTV
Sbjct: 121 GLAPSQR-----------SYYRLARSLKSDTV 141


  Database: BlastDB/nr_B
    Posted date:  May 30, 2005 10:07 PM
  Number of letters in database: 841,197,525
  Number of sequences in database:  2,481,719
  
Lambda     K      H
   0.318    0.133    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
length of query: 183
length of database: 841,197,525
effective HSP length: 120
effective length of query: 63
effective length of database: 543,391,245
effective search space: 34233648435
effective search space used: 34233648435
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 424 (167.9 bits)