BLASTP 1.5.6-Paracel [2003-11-25] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 532O09.AutoPredgene11 (183 letters) Database: BlastDB/nr_B 2,481,719 sequences; 841,197,525 total letters Searching...................................................done Score E Sequences producing significant alignments: (bits) Value gi|12698289|dbj|BAB21761.1| polyprotein [Bombyx mori] 254 6e-67 gi|474339|gb|AAA17752.1| reverse transcriptase [Bombyx mori] 248 7e-65 gi|4521269|dbj|BAA76304.1| endonuclease and reverse transcriptas... 246 2e-64 gi|57506578|dbj|BAD86660.1| endonuclease [Bombyx mori] 219 2e-56 >gi|12698289|dbj|BAB21761.1| polyprotein [Bombyx mori] Length = 923 Score = 254 bits (650), Expect = 6e-67 Identities = 137/166 (82%), Positives = 138/166 (83%), Gaps = 11/166 (6%) Query: 1 MKLGRAPDSVPVTRTVVDWHTLGISLAEXXXXXXXXXXXXXXXXQDTAEAIDIVTSHITS 60 MKLGRAPDSVPVTRTVVDWHTLGISLAE QDTAEAIDIVTSHITS Sbjct: 225 MKLGRAPDSVPVTRTVVDWHTLGISLAESDPPSLPFSPDSTPSPQDTAEAIDIVTSHITS 284 Query: 61 TLDRSSKQVVAEDFLHRFKLPDDIRELLRAKNASIRAYDRYPTVENRTRMRALQRDVKSR 120 TLDRSSKQVVAEDFLHRFKLPDDIRELLRAKNASIRAYDRYPTVENRTRMRALQRDVKSR Sbjct: 285 TLDRSSKQVVAEDFLHRFKLPDDIRELLRAKNASIRAYDRYPTVENRTRMRALQRDVKSR 344 Query: 121 IAEVRDARWSDFLEGLAPSQSPLTTGALGLAPSYYRLARTLKSDTV 166 IAEVRDARWSDFLEGLAPSQ SY+RLARTLKSDTV Sbjct: 345 IAEVRDARWSDFLEGLAPSQR-----------SYHRLARTLKSDTV 379 >gi|474339|gb|AAA17752.1| reverse transcriptase [Bombyx mori] Length = 960 Score = 248 bits (632), Expect = 7e-65 Identities = 134/166 (80%), Positives = 135/166 (81%), Gaps = 11/166 (6%) Query: 1 MKLGRAPDSVPVTRTVVDWHTLGISLAEXXXXXXXXXXXXXXXXQDTAEAIDIVTSHITS 60 MKLGRAPDSVPVTRTVVDWHTLGISLAE QDTAEAIDI+TSHITS Sbjct: 225 MKLGRAPDSVPVTRTVVDWHTLGISLAESDPPSLPFNPDSIPSPQDTAEAIDILTSHITS 284 Query: 61 TLDRSSKQVVAEDFLHRFKLPDDIRELLRAKNASIRAYDRYPTVENRTRMRALQRDVKSR 120 TLDRSSKQVVAEDFLHRFKL DDIRELLRAKNASIRAYDRYPT ENR RMRALQRDVKSR Sbjct: 285 TLDRSSKQVVAEDFLHRFKLSDDIRELLRAKNASIRAYDRYPTTENRIRMRALQRDVKSR 344 Query: 121 IAEVRDARWSDFLEGLAPSQSPLTTGALGLAPSYYRLARTLKSDTV 166 IAEVRDARWSDFLEGLAPSQ SYYRLARTLKSDTV Sbjct: 345 IAEVRDARWSDFLEGLAPSQR-----------SYYRLARTLKSDTV 379 >gi|4521269|dbj|BAA76304.1| endonuclease and reverse transcriptase-like protein [Bombyx mori] Length = 960 Score = 246 bits (629), Expect = 2e-64 Identities = 133/166 (80%), Positives = 135/166 (81%), Gaps = 11/166 (6%) Query: 1 MKLGRAPDSVPVTRTVVDWHTLGISLAEXXXXXXXXXXXXXXXXQDTAEAIDIVTSHITS 60 MKLGR+PDSVPVTRTVVDWHTLGISLAE QDTAEAIDI+TSHITS Sbjct: 225 MKLGRSPDSVPVTRTVVDWHTLGISLAESDPPSLPFSPDSTPSPQDTAEAIDILTSHITS 284 Query: 61 TLDRSSKQVVAEDFLHRFKLPDDIRELLRAKNASIRAYDRYPTVENRTRMRALQRDVKSR 120 TLDRSSKQVVAEDFLHRFKLPDDI ELLRAKNASIRAYDRYPTVENR RMRALQR VKSR Sbjct: 285 TLDRSSKQVVAEDFLHRFKLPDDIGELLRAKNASIRAYDRYPTVENRIRMRALQRGVKSR 344 Query: 121 IAEVRDARWSDFLEGLAPSQSPLTTGALGLAPSYYRLARTLKSDTV 166 IAEVRDARWSDFLEGLAPSQ SYYRLARTLKSDTV Sbjct: 345 IAEVRDARWSDFLEGLAPSQR-----------SYYRLARTLKSDTV 379 >gi|57506578|dbj|BAD86660.1| endonuclease [Bombyx mori] Length = 204 Score = 219 bits (559), Expect = 2e-56 Identities = 119/152 (78%), Positives = 120/152 (78%), Gaps = 11/152 (7%) Query: 15 TVVDWHTLGISLAEXXXXXXXXXXXXXXXXQDTAEAIDIVTSHITSTLDRSSKQVVAEDF 74 TVVDWHTLGISLAE QDTAEAIDIVTSHI STLDRSSKQVVAEDF Sbjct: 1 TVVDWHTLGISLAESDPPSLPFSPDSIPSPQDTAEAIDIVTSHIISTLDRSSKQVVAEDF 60 Query: 75 LHRFKLPDDIRELLRAKNASIRAYDRYPTVENRTRMRALQRDVKSRIAEVRDARWSDFLE 134 LHRFKLPDDIRELLRAKNASIRAYDRYPT ENR RMRALQRDVKSRI EVRDARWSDFLE Sbjct: 61 LHRFKLPDDIRELLRAKNASIRAYDRYPTAENRIRMRALQRDVKSRITEVRDARWSDFLE 120 Query: 135 GLAPSQSPLTTGALGLAPSYYRLARTLKSDTV 166 GLAPSQ SYYRLAR+LKSDTV Sbjct: 121 GLAPSQR-----------SYYRLARSLKSDTV 141 Database: BlastDB/nr_B Posted date: May 30, 2005 10:07 PM Number of letters in database: 841,197,525 Number of sequences in database: 2,481,719 Lambda K H 0.318 0.133 0.379 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of HSP's successfully gapped in prelim test: 0 length of query: 183 length of database: 841,197,525 effective HSP length: 120 effective length of query: 63 effective length of database: 543,391,245 effective search space: 34233648435 effective search space used: 34233648435 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 424 (167.9 bits)